Organism | Group | Process | Method(s) | Citation (APA 7) | Notes |
---|---|---|---|---|---|
Arthropods | Suzuki, Y., Chou, J., Garvey, S. L., Wang, V. R., & Yanes, K. O. (2019). Evolution and regulation of limb regeneration in arthropods. In W. Tworzydlo & S. M. Bilinski (Eds.), Evo-devo: Non-model species in cell and developmental biology (pp. 419-454). Springer, Cham. https://doi.org/10.1007/978-3-030-23459-1_17 | ||||
Annelids | Joseph, N. A., Chen, C.-F., Chen, J.-H., & Chen, L.-Y. (2022). Monitoring telomere maintenance during regeneration of annelids. In S. Blanchoud & B. Galliot (Eds.), Whole-body regeneration: Methods and protocols (pp. 467-478). Humana. https://doi.org/10.1007/978-1-0716-2172-1_24 | ||||
Salamander | Vertebrate | Limb regeneration | Kaucka, M., Joven Araus, A., Tesarova, M., Currie, J. D., Bostrom, J., Kavkova, M., Petersen, J., Yao, Z., Bouchnita, A., Hellander, A., Zikmund, T., Elewa, A., Newton, P. T., Fei, J.-F., Chagin, A. S., Fried, K., Tanaka, E. M., Kaiser, J., Simon, A., & Adameyko, I. (2022). Altered developmental programs and oriented cell divisions lead to bulky bones during salamander limb regeneration. Nature Communications, 13(1), 6949. https://doi.org/10.1038/s41467-022-34266-w | ||
Mouse | Vertebrate | Cre-lox barcoding | Pei, W., Wang, J., Rossler, J., Feyerabend, T. B., Hofer, T., & Rodewald, H.-R. (2019). Using Cre-recombinase-driven Polylox barcoding for in vivo fate mapping in mice. Nature Protocols, 14(6), 1820-1840. https://doi.org/10.1038/s41596-019-0163-5 | ||
Regeneration from Cells to Limbs: Past, Present, and Future. Frontiers in Cell and Developmental Biology. https://www.frontiersin.org/research-topics/17983/regeneration-from-cells-to-limbs-past-present-and-future#articles | Collection of 28 articles spanning the topic of regeneration. | ||||
Acoels | Harvard University, Department of Organismic and Evolutionary Biology (2023, January 18). A biological wonder: Harvard researchers discover embryonic origins of adult pluripotent stem cells. SciTechDaily. | Newspaper article. You can also read the original research article in Cell. | |||
Model systems for regeneration. The Company of Biologists. https://journals.biologists.com/dev/collection/63/Model-systems-for-regeneration | Series of 8 articles highlighting key model systems and species that are currently being used to study tissue and organ regeneration. | ||||
Mouse | Digit tip regeneration | scRNAseq | Johnson, G. L., Masias, E. J., & Lehoczky, J. A. (2020). Cellular heterogeneity and lineage restriction during mouse digit tip regeneration at single-cell resolution. Developmental Cell, 52(4), 525-540.e5. https://doi.org/10.1016/j.devcel.2020.01.026 | ||
Hydractinia | Cnidarian | Whole body regeneration | Transgenesis | ||
Parhyale | Crustacean | Leg regeneration | Live imaging, transgenesis | Alwes, F., Enjolras, C., & Averof, M. (2016). Live imaging reveals the progenitors and cell dynamics of limb regeneration. eLife, 5. https://doi.org/10.7554/eLife.19766 | |
Parhyale | Crustacean | Leg regeneration | Cell lineage tracing, CRISPR | Cevrim, B. C. (2020). Tracking cell fates during limb regeneration (2021LYSEN006). [Doctoral dissertation, University of Lyon]. | |
Planaria | Whole body regeneration | scRNAseq | Benham-Pyle, B. W., Brewster, C. E., Kent, A. M., Mann Jr, F. G., Chen, S., Scott, A. R., Box, A. C., & Alvarado, A. S. (2021). Identification of rare post-mitotic cell states induced by injury and required for whole-body regeneration in Schmidtea mediterranea. Nature Cell Biology, 23(9), 939-952. https://doi.org/10.1038/s41556-021-00734-6 | ||
Planaria | Regeneration | Reddien, P. W. (2018). The cellular and molecular basis for planarian regeneration. Cell, 175(2), 327-345. https://doi.org/10.1016/j.cell.2018.09.021 | Review article. | ||
Planaria | Regeneration | Press and split planaria | Arnold, C. P., Benham-Pyle, B. W., Lange, J. J., Wood, C. J., & Alvarado, A. S. (2019). Wnt and TGFβ coordinate growth and patterning to regulate size-dependent behaviour. Nature, 572(7771), 655-659. https://doi.org/10.1038/s41586-019-1478-7 | ||
Holstein, T. W. (2019, August 14) What makes flatworms go to pieces. News and Views. https://www.nature.com/articles/d41586-019-02376-z | Commentary on above paper. | ||||
Planaria | Techniques | scRNAseq | Garcia-Castro, H. & Solana, J. (2022). Single-cell transcriptomics in planaria: New tools allow new insights into cellular and evolutionary features. Biochemical Society Transactions, 50(5), 1237-1246. https://doi.org/10.1042/BST20210825 | Review article. | |
Planaria | Ivankovic, M., Haneckova, R., Thommen, A., Grohme, M. A., Vila-Farre, M., Werner, S., & Rink, J. C. (2019). Model systems for regeneration: planarians. Development, 146(17). https://doi.org/10.1242/dev.167684 | Review article. | |||
Planaria | Regeneration competent and incompetent | Comparative, RNAi, bulk RNAseq | Sikes, J. M. & Newmark, P. A. (2013). Restoration of anterior regeneration in a planarian with limited regenerative ability. Nature, 500(7460), 77-80. https://doi.org/10.1038/nature12403 | ||
Hydra | Cnidarian | Hydra regeneration | Juliano, C. [Carnegie Science Embryology]. (2020, October 2). Mechanisms of Development and Regeneration in Hydra (Celia Juliano) // 2020 Minisymposium - Keynote [Video]. YouTube. https://www.youtube.com/watch?v=hmkeZ7_6owI | ||
Zebrafish | Vertebrate | Hair cell regeneration | scRNAseq | Lush, M. E., Diaz, D. C., Koenecke, N., Baek, S., Boldt, H., St. Peter, M. K., Gaitan-Escudero, T., Romero-Carvajal, A., Busch-Nentwich, E. M., Perera, A. G., Hall, K. E., Pak, A., Haug, J. S., & Piotrowski, T. (2019). scRNA-Seq reveals distinct stem cell populations that drive hair cell regeneration after loss of Fgf and Notch signaling. eLife, 8. https://doi.org/10.7554/eLife.44431 | |
Lu, S., Schneider, I., Zeng, H., & He, S. (2023). The use of single-cell sequencing to reveal stem/progenitor cells in animal organ regeneration. Water Biology and Security, 2(1). https://doi.org/10.1016/j.watbs.2022.100081 | Review of scRNAseq in regeneration. | ||||
Zebrafish | Vertebrate | Heart regeneration | scRNAseq |
Honkoop, H., de Bakker, D. E. M., Aharonov, A., Kruse, F., Shakked, A., Nguyen, P. D., de Heus, C., Garric, L., Muraro, M. J., Shoffner, A., Tessadori, F., Craiger Peterson, J., Noort, W., Bertozzi, A., Weidinger, G., Posthuma, G., Grun, D., van der Laarse, W. J., Klumperman, J., . . . Baakers, J. (2019). Single-cell analysis uncovers that metabolic reprogramming by ErbB2 signaling is essential for cardiomyocyte proliferation in the regenerating heart. eLife, 8. https://doi.org/10.7554/eLife.50163 |
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Axolotl | Vertebrate | Limb regeneration | scRNAseq | Gerber, T., Murawala, P., Knapp, D., Masselink, W., Schuez, M., Hermann, S., Gac-Santel, M., Nowoshilow, S., Kageyama, J., Khattak, S., Currie, J. D., Camp, J. G., Tanaka, E. M., & Treutlein, B. (2018). Single-cell analysis uncovers convergence of cell identities during axolotl limb regeneration. Science, 362(6413), 421. https://doi.org/10.1126/science.aaq0681 | |
Srivastava, M. (2021). Beyond casual resemblance: Rigorous frameworks for comparing regeneration across species. Annual Review of Cell and Developmental Biology, 37(1), 415-440. https://doi.org/10.1146/annurev-cellbio-120319-114716 | Framework for comparing regeneration across animals. | ||||
Stentor | Marshall, W. F. (2021). Regeneration in Stentor coeruleus. Frontiers in Cell and Developmental Biology, 9, 753625. https://doi.org/10.3389/fcell.2021.753625 | ||||
C. elegans | Nematode | Axon regeneration | Hammarlund, M. & Jin, Y. (2014). Axon regeneration in C. elegans. Current Opinion in Neurobiology, 27, 199-207. https://doi.org/10.1016/j.conb.2014.04.001 | ||
Sea star | Echnioderm | Meyer, A, & Hinman, V. (2022). Chapter eighteen - The arm of the starfish: The far-reaching applications of Patiria miniata as a model system in evolutionary, developmental, and regenerative biology. In B. Goldstein & M. Srivastava (Eds.), Emerging model systems in developmental biology (pp. 523-543). Elsevier. https://doi.org/10.1016/bs.ctdb.2022.01.006 | |||
Drosophila | Hariharan, I. K. & Serras, F. (2017). Imaginal disc regeneration takes flight. Current Opinion in Cell Biology, 48, 10-16. https://doi.org/10.1016/j.ceb.2017.03.005 | ||||
African spiny mouse | Seifert, A. W. & Temple-Smith, P. (2022). Chapter twenty-three - A remarkable rodent: Regeneration and reproduction in spiny mice (Acomys). In B. Goldstein & M. Srivastava (Eds.), Emerging model systems in developmental biology (659-707). Elsevier. https://doi.org/10.1016/bs.ctdb.2021.12.017 | Review. | |||
Axolotl | Echeverri, K., Fei, J. & Tanaka, E. M. (2022). Chapter twenty-two - The axolotl's journey to the modern molecular era. In B. Goldstein & M. Srivastava (Eds.), Emerging model systems in developmental biology (631-658). Elsevier. https://doi.org/10.1016/bs.ctdb.2021.12.010 | Review. | |||
Pristina leidyi | Annelid | Bely, A. E. (2022). Chapter sixteen - Journey beyond the embryo: The beauty of Pristina and naidine annelids for studying regeneration and agametic reproduction. In B. Goldstein & M. Srivastava (Eds.), Emerging model systems in developmental biology (469-495). Elsevier. https://doi.org/10.1016/bs.ctdb.2021.12.020 | Review. | ||
Platynereis dumerilii | Annelid |
Ozpolat, B. D., Randel, N., Williams, E. A., Bezares-Calderon, L. A., Andreatta, G., Balavoine, G., Bertucci, P. Y., Ferrier, D. E. K., Gambi, M. C., Gazave, E., Handberg-Thorsager, M., Hardege, J., Hird, C., Hsieh, Y.-W., Hui, J., Mutemi, K. N., Schneider, S. Q., Simakov, O., Vergara, H. M., . . . Arendt, D. (2021). The Nereid on the rise: Platynereis as a model system. EvoDevo, 12(1), 10. https://doi.org/10.1186/s13227-021-00180-3 |
Review. | ||
Syllids | Annelid | Ribeiro, R. P., Bleidorn, C., & Aguado, M. T. (2018). Regeneration mechanisms in Syllidae (Annelida). Regeneration, 5(1), 26-42. https:/doi.org/10.1002/reg2.98 | Review. | ||
Planaria | Newmark, P. A. & Sanchez Alvarado, A. (2022). Chapter eleven - Schmidtea happens: Re-restablishing the planarian as a model for studying the mechanisms of regeneration. In B. Goldstein & M. Srivastava (Eds.), Emerging model systems in developmental biology (307-344). Elsevier. https://doi.org/10.1016/bs.ctdb.2022.01.002 | Review. | |||
Acoels | Srivastava, M. (2022). Chapter six - Studying development, regeneration, stem cells, and more in the acoel Hofstenia miamia. In B. Goldstein & M. Srivastava (Eds.), Emerging model systems in developmental biology (153-172). Elsevier. https://doi.org/10.1016/bs.ctdb.2022.01.003 | Review. | |||
Ascidians | Vanni, V., Ballarin, L., Gasparini, F., Peronato, A., & Manni, L. (2022). Studying regeneration in ascidians: An historical overview. In In S. Blanchoud & B. Galliot (Eds.), Whole-body regeneration: Methods and protocols (pp. 27-48). Humana. https://doi.org/10.1007/978-1-0716-2172-1_2 | Review. | |||
Zebrafish | Gonzalez-Rosa, J. M., Burns, C. E., & Burns, C. G. (2017). Zebrafish heart regeneration: 15 years of discoveries. Regeneration, 4(3), 105-123. https://doi.org/10.1002/reg2.83 | Review on heart regeneration. | |||
Mouse | Dolan, C. P., Dawson, L. A., & Muneoka, K. (2018). Digit tip regeneration: Merging regeneration biology with regenerative medicine. Stem Cells Translational Medicine, 7(3), 262-270. https://doi.org/10.1002/sctm.17-0236 | Review on digit tip regeneration. |